rs28165021 SNP Detail

Summary

• ID
  rs28165021
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109511856 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTTAACT CTTTTGAGAC
  AGGGTCTCAT TATATAGGCT GGGGTGATCT TGAATTGACA GAGATCCCAC TTGCCTCACC
  TTAAATTTTT ATCTATTAAG ATAATCAGTA TTTTCTTAAT ATGCCAAATT AAGATGTATT
  AAATTGTTTT GAAAAACCAC AAATTACTTC CAAGATGTTC CTAGATCTTG ATTTTACACT
  W
  AAAAAATTAG TAGCATATGT AAAATATTAA GTACTTTTTG CATTCCAAGT TATATTCAAG
  ACATAAATGC ACTATTGCTG CGACTTCGTG TCCAGACTTC TTGACTTTTA CCTTCACTTC
  TGAAAAAATG CAGACCAAGG CTTTTACTCA TAGGCCCAGG GTAAATTTGT AGTTGTGGGA
  CTAACAACTA CTATTTAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss38277258	NES09507966	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	A	A	T	T	A		A	T	A
ss321254440	CHEV_4_109327264	CHEVERUD	SCREENING_POP	f	SNP											A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs28165021					SNP	T	T	T	A	T	A	A	T	T	A	A	A	T	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277258	NES09507966	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109511856 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Gm12811	predicted gene 12811	within coordinates
Tssr42773	transcription start site region 42773	1867 bp downstream