rs28165025 SNP Detail

Summary

• ID
  rs28165025
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109511028 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAATATATG TAATTTATAG
  ATATGGCTGG AATAACAGTG TTTCTTTGAA ACATTATTCA AATGCAAAGA GTAGAAATTT
  CATAGGAAAC TGGAAAACTG TCCATATAAG AAAATTAACT TTGCTTATAT TAATAAAAAC
  ACTGGTATTT TTTGCCTTGT GTTTTTATTC TTGGACAAAT GTGTTTTACT GTTCATCCTT
  W
  GTCGTTGCTT TTAGATTCCT TATCAAACTT TTCCTTTTGT GTAATTAATA TTTAATCTCT
  GGCCATGTCT ATTTAAAATA TCCATTTGTC CTCTTGTCAT TATCAAGATT CTGGCTTTGC
  ATTTGAAATT TCTTAACCGT AAATGTTAAT GGCTTGTTAT ATACATGCCC TATGACAAGA
  ATTTTAAGTA ATACCAGGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38277262	NES09508045	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	T	A	A	T		T	A	T		T
ss321254437	CHEV_4_109326436	CHEVERUD	SCREENING_POP	f	SNP											T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28165025					SNP	A	A	A	T	A	T	T	A	A	T	T	T	A	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277262	NES09508045	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109511028 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	within coordinates
Gm12811	predicted gene 12811	within coordinates