rs28165027 SNP Detail

Summary

• ID
  rs28165027
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:109509201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TAAAGGCTCC TGAGGGGCAG GGTCTTTGCA CACATGTTGC
  TGCTCTTTAC AAGAACTTAA AAAATGAGGG GTTGTTTCTC CCAGTTTTCA AATGCAGAAA
  R
  CCTAGAGTCC CTGCAGCATA AGCCTATTAG GTGACCATGT TGATGGATTC ATGATACATG
  ATATTAGCCA CCTGACTGAT TTGTGCCAAT TTGATGAAAA                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
ss38277264	NES09508136	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C3H/HeJ	CAST/EiJ	KK/HlJ	NOD/ShiLtJ	WSB/EiJ
rs28165027					SNP	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38277264	NES09508136	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109509201 () rs orientation: forward

Symbol	Name	Function Class
9630013D21Rik	RIKEN cDNA 9630013D21 gene	423 bp downstream
Gm12811	predicted gene 12811	within coordinates
Gm40227	predicted gene, 40227	1809 bp upstream