rs28169869 SNP Detail

Summary

• ID
  rs28169869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101942857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATATGGC TTTTCAAAGG
  CCTTTCATAT TAGTTGTCCC TTCCCACATT CTCTCCTTCA GCCTGCTTTC CTATCCTCCT
  CTCCATTTAA TATTCCTGCT CCTATAAAAG CCAGTCAGAA TTGTATCACC TCTGTGGAAC
  ACTTCTTAGT TACCCATTGG TAAGTTTTGA TGTTTCCTTG GGGACTTTCC TATGTTCCTT
  R
  GAAACCAAGC ACCCCTGTCT GCATCCCTCT TCCTTCCTTC CTTCCTTCCT TCCTTCCTTC
  CTTCCTTCCT TCCTTCCTTC CTTCCTTCCT TTTTATCTTA CTTCTGAATT GAATCCAGCA
  TTTGAGAGAC AGTTTTTGCA TTTCGTCCTT CCTTTCTTGG CACCATGGCT GTTTTTGCTC
  GAATCTTCTG CTGTCCCGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310388	NES09528152	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	A		G	G	G	G		A
ss321232345	CHEV_4_101758265	CHEVERUD	SCREENING_POP	f	SNP											G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28169869					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310388	NES09528152	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101942857 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	1648 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	1883 bp upstream
Rr99646	regulatory region 99646	1543 bp proximal
Tssr38021	transcription start site region 38021	1955 bp upstream