rs28179553 SNP Detail

Summary

• ID
  rs28179553
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101031167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGAGAA GAGAAGGGAA
  GGAGGAAGAA AAGGAGAAGA GGGAAGGAAG GAGGGGAGAG GAAAGAAGAG GAGGAAGAAA
  AGGAGGAAGG GCGACAGGGA GGGAAGGAAG GAGGGAGGGA GGGAGGACCA GACATAGGAA
  GAATACAGAG TCGTGCTATT GAGTGTCCTA TCAGGTAGGA TATTCTTTCC AGACTACCAG
  W
  GACTTGCTCA GAGAGAGACC CTGGTGTTCC TTTCTCCCAC AGTTCCTGGG CTGGGTGGTA
  GTGAACAGAT ACCTTGTAGC TGCATCCCCT GGCCCACATC TATGTCCCCA CTGACCTCAG
  ACTTTTCAAA GCAGGTGACA GTCATAAGAA TGTTGTCAAA GTCGGTGCAG CTCCACCTCA
  GCACGTACAT CCCCTCTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38313472	NES09516749	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	T	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28179553					SNP	A	A	A	T	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313472	NES09516749	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101031167 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	892 bp distal
Rr596082	regulatory region 596082	1214 bp proximal
Tssr42542	transcription start site region 42542	1852 bp upstream