rs28179555 SNP Detail

Summary

• ID
  rs28179555
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101031120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTGGTCA CATTCTACCT
  TCTAAGGTTA CAGTCCTTCT CCGGAGAGAA AAGAGAAGAG AAGGGAAGGA GGAAGAAAAG
  GAGAAGAGGG AAGGAAGGAG GGGAGAGGAA AGAAGAGGAG GAAGAAAAGG AGGAAGGGCG
  ACAGGGAGGG AAGGAAGGAG GGAGGGAGGG AGGACCAGAC ATAGGAAGAA TACAGAGTCG
  K
  GCTATTGAGT GTCCTATCAG GTAGGATATT CTTTCCAGAC TACCAGAGAC TTGCTCAGAG
  AGAGACCCTG GTGTTCCTTT CTCCCACAGT TCCTGGGCTG GGTGGTAGTG AACAGATACC
  TTGTAGCTGC ATCCCCTGGC CCACATCTAT GTCCCCACTG ACCTCAGACT TTTCAAAGCA
  GGTGACAGTC ATAAGAATGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38313474	NES09516747	PERLEGEN	MM_PANEL2	f	SNP	T	T	G		G	T	G		G
ss321229026	CHEV_4_100846528	CHEVERUD	SCREENING_POP	f	SNP				T				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179555					SNP	T	T	G	T	G	T	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313474	NES09516747	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101031120 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	845 bp distal
Rr596082	regulatory region 596082	1261 bp proximal
Tssr42542	transcription start site region 42542	1805 bp upstream