rs28179556 SNP Detail

Summary

• ID
  rs28179556
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:101030798 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCTCTAA AACCTTTTAA
  GCATTCTAAA ATGTTGCGTG AATAGAAAAG GCACTGCAGG GACCATGAAT CAGCAATCGT
  TTGGAGCTGC ATCTGGCTGT TTATGCAGCA GACACTTTGG GAAAGCAATT TATGTTAAAA
  TGCCCAAAGC TGTTGCTGGG GGAAACAGGC CATGTTGACG AGGTGGCTCT TTGACATTAG
  Y
  CTACACCAGA GAATGCCACA GGCAAACACA GTTCTAGGTT TGATGATTCT GCCACTGGCT
  ATAGAGTAAG TCACTCTAGA TAATTAAGCT AAAGTTCACA TGTGCCTGAT GGAATGGCGG
  TTTTCTGGTC ACATTCTACC TTCTAAGGTT ACAGTCCTTC TCCGGAGAGA AAAGAGAAGA
  GAAGGGAAGG AGGAAGAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38313475	NES09516823	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28179556					SNP	C	C	C	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313475	NES09516823	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101030798 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	Intron
Rr596081	regulatory region 596081	523 bp distal
Rr596082	regulatory region 596082	1583 bp proximal
Tssr42542	transcription start site region 42542	1483 bp upstream