rs28179557 SNP Detail

Summary

• ID
  rs28179557
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101030777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCACCCTCG ACATCTTCTA
  AAATTCTCTA AAACCTTTTA AGCATTCTAA AATGTTGCGT GAATAGAAAA GGCACTGCAG
  GGACCATGAA TCAGCAATCG TTTGGAGCTG CATCTGGCTG TTTATGCAGC AGACACTTTG
  GGAAAGCAAT TTATGTTAAA ATGCCCAAAG CTGTTGCTGG GGGAAACAGG CCATGTTGAC
  R
  AGGTGGCTCT TTGACATTAG CCTACACCAG AGAATGCCAC AGGCAAACAC AGTTCTAGGT
  TTGATGATTC TGCCACTGGC TATAGAGTAA GTCACTCTAG ATAATTAAGC TAAAGTTCAC
  ATGTGCCTGA TGGAATGGCG GTTTTCTGGT CACATTCTAC CTTCTAAGGT TACAGTCCTT
  CTCCGGAGAG AAAAGAGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38313476	NES09516822	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28179557					SNP	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313476	NES09516822	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101030777 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	502 bp distal
Rr596082	regulatory region 596082	1604 bp proximal
Tssr42542	transcription start site region 42542	1462 bp upstream