rs28179558 SNP Detail

Summary

• ID
  rs28179558
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101030654 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCAACTTAG TCTACATTAT
  GAGATCAGGG ACAGCCAGAG CTACACAGAG AAATCCTGTC TCAAAACAAA CAAACAAACA
  AACAAACACA CCAAGAAAAG CCCAACCCCA CAACAAACAA AACCTCACCC TCGACATCTT
  CTAAAATTCT CTAAAACCTT TTAAGCATTC TAAAATGTTG CGTGAATAGA AAAGGCACTG
  S
  AGGGACCATG AATCAGCAAT CGTTTGGAGC TGCATCTGGC TGTTTATGCA GCAGACACTT
  TGGGAAAGCA ATTTATGTTA AAATGCCCAA AGCTGTTGCT GGGGGAAACA GGCCATGTTG
  ACGAGGTGGC TCTTTGACAT TAGCCTACAC CAGAGAATGC CACAGGCAAA CACAGTTCTA
  GGTTTGATGA TTCTGCCACT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38313477	NES09516821	PERLEGEN	MM_PANEL2	f	SNP	C	C	G		G	C	G		G
ss321229024	CHEV_4_100846062	CHEVERUD	SCREENING_POP	f	SNP				C				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179558					SNP	C	C	G	C	G	C	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313477	NES09516821	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101030654 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	379 bp distal
Rr596082	regulatory region 596082	1727 bp proximal
Tssr42542	transcription start site region 42542	1339 bp upstream