rs28179559 SNP Detail

Summary

• ID
  rs28179559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101030100 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACAATGGAA CAGCACCACC
  TCTATCATAT GGCCTCTGTA AGTTCTCTTT AGCTGCATGT ACAATCAACA ATCCTCTTTG
  TGACTGTCCT TTCCCCAGGC AACCTGACTG ACTAGGATGT TGCTCTGAGT CTACCTCAGA
  AGGCGGGGCT ACCTTACAGC CATGCATACT AATAAACTTC CTCCAAAGAC TGACCAGTAA
  R
  TGAAAACAGG AAGCCACCAA GCCCAAGGCA GCCCTGAGGT CTGGCTGTTC AGGAACACTC
  CTGGAACTTT ACCCAGTACA TCTGGCAGCA CTGGGTTCCT TATGTGACTT CCTCCTTCCA
  CTTTGACAGA GCCCAGTCCT CGGGGCTCTC TTAACACTTG TCTCCTGTGT CTGATGCTTT
  GCCTCCATCA ACAGGTTCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss38313478	NES09516878	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28179559					SNP	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313478	NES09516878	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101030100 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Tssr42542	transcription start site region 42542	785 bp upstream