rs28179560 SNP Detail

Summary

• ID
  rs28179560
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101029623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTACATA TATATATATA
  TATATATATA TATATACACA CACACATACA TACATATACC CACACATGAA TGAAAATATA
  ATAAACCCAT TATTATGTAT AATTAATATA TGATATTTTT ATAAGAAAAA AACCATTAGT
  ACTTTATAAA GATTAACCAG TGTATGTATG AAATAAGAAC TGTGAAGGTT AAATTCACTC
  R
  GAACTCTTTC AGAGTGAGCC CTCACACACT ATGAACCAGC CCAAGGAGAA GCACACACAC
  TGGGAGCTGG GAGCTGGGAG CTGGGAGCTG GCTGTCCATC CAGGCCATAA TTCCAGCACC
  ACAAAAACCT GTCCGAGAAG CTTTCTTCCA TGGCTCTTCT TATACAAAGA AAAAAAATAT
  AAAGAGTGAG AGCCAGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss38313479	NES09516877	PERLEGEN	MM_PANEL2	f	SNP	G	G	A		A	G	A		A
ss321229021	CHEV_4_100845031	CHEVERUD	SCREENING_POP	f	SNP				G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179560					SNP	G	G	A	G	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313479	NES09516877	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101029623 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	335 bp proximal
Tssr42542	transcription start site region 42542	308 bp upstream