rs28179561 SNP Detail

Summary

• ID
  rs28179561
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101028801 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGGCCA CCCAATACCT
  GCCATCCACA AAAACAACCA TGTTTACAAT GGGATCAGGC AATGTAATAT TAGGGGTCAC
  TGAGCAAGAA GGTGTAGAAA CTGTATGTCT AAAAATATCC CCCAATAAAC TTCATCAACA
  AGCCAACCAA GCAGTAAGTC AATAATGAAA TAGTACCCGG AAAGTAAAAA GGGGCCAGCA
  Y
  GTCACATATG GAGAGCTTAC AGCTACAGAA AGGTCATCTG CGTTTTGACC TGTGAGATGA
  AGGTCGTGAA AAAATGTCAC AGGATTGTTG CAAAAGTCAT AGGACTTTTG TTTAAAGAAA
  AAAACCAAAA CCTTCACACA TTTTAGAATG ATCAATTATT GAAAACTGAA CCCTAAATGG
  GTATCTATAT CACCTCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38313480	NES09516944	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BTBR T<+> Itpr3/J	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28179561					SNP	C	C	C	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313480	NES09516944	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101028801 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Rr596081	regulatory region 596081	1157 bp proximal
Tssr42542	transcription start site region 42542	512 bp downstream