rs28179565 SNP Detail

Summary

• ID
  rs28179565
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101027775 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGGCCA GGTAACCCCC
  AAAGCATCCT TTCACACTCA CATTCTGAGG CAAGGAGTCT ACCTCATGGA CATTAGCCAT
  GCTTCTTTCA GAGCTTAACC AAAACCAGGT GAGTCCCTGG GCCCTTGCCT GGGTTTTAGT
  TCCTGCTCCT TCTATAGCCC TCTGACTGCA GGAGAAGGCT GCAGTCCCTT GGTATGGCAG
  Y
  CAATCTGTTC TCCTCAGTTC CATTTCTCCT GTCCTTCTCT ACTTCACAGT GGTCCTCTTG
  AAGCTCCCTA CAGCTCCTGC CCTGGCCTAC CACACTGGTC CTGCATCAGC TCTACTGGGC
  AGGCCTTTGC CAAACTGGCA CCTCCCTCTC ATAACCCAAC ACTACGCTCA ACATCTGCTC
  AGGACTCAGA GATTTGGACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38313484	NES09516936	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C		C	C	C	C		T
ss321229015	CHEV_4_100843183	CHEVERUD	SCREENING_POP	f	SNP											C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179565					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38313484	NES09516936	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101027775 () rs orientation: forward

Symbol	Name	Function Class
Jak1	Janus kinase 1	within coordinates
Tssr42542	transcription start site region 42542	1538 bp downstream