rs28179875 SNP Detail

Summary

• ID
  rs28179875
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:24176548 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGTCTG TTCAGGGTGT
  GGATGGGGTG GCAAGAACAT ATGAGGCCTC TGAGGGCTTT GTGACTCTGC TGGGGACACC
  TTAATGGCAT GTACAAAAAT TTTTATTCTT GAAGTTGCTG CTTTTTTACG GTTCCAATTT
  CTGACTGACA CTTTCCCTTG ATTGCTGGAT CAATGCATGC TCTTAGCTGT AAGTTGGAGA
  Y
  GTCACCATTT TCTGTTAGAA TTACACATTT ACATGGGACA GACCTGAAGG CCACACACTT
  CCAGTACTTA TTCAAAACCC CAGAAGCTCC CAGGGGCCTC CTGAGGTAAG GGATACCTAG
  AATGTTCTGG CTTTTCTGGA GACACGTTGG CTACTCTTCT GTTTATTTGG AATCCATCTG
  CTGATGGCTG TTGCAGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37072494	NES08364579	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28179875					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37072494	NES08364579	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:24176548 () rs orientation: forward

Symbol	Name	Function Class
D11Mit152	DNA segment, Chr 11, Massachusetts Institute of Technology 152	143 bp distal
Gm33440	predicted gene, 33440	within coordinates
Gm71861	predicted gene, 71861	1203 bp downstream
Rr385801	regulatory region 385801	within coordinates