rs28179878 SNP Detail

Summary

• ID
  rs28179878
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:24175544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCATCTCTTT CTTTGAGTTG
  GCCACCACAA GAATTTTGTC ACAGTGATAG AATCAACACA CACCTCCTCT CTGTCTGGGC
  TAAGCCAAGG CTGATGCACA TCTCTGCTGA GCTTCTGAAC AATTCCACTC CTGTTCTTTC
  CCCAAGTTGT CTTCTTTTTG GATGCATCAT TCATCCAGCT GTTTCTGCAG TAGGTCCTTG
  Y
  GTCTAAATGC CCAGTCACTG TATTTTGCAC AAGCTTGAGA TCCCAAGGGG TGTCCTTAGT
  GCCATGCCTG TTGGAGAGGG GCTTGAAGCC CAGAGAGTGC TAACTGGTTA TGTCGGGAAT
  GTTCCATTTG GCAGACATCT ACTATGAACC TCTGGTTGGA TCTGCATCTG CCCTGATTTT
  GTGTCCCTTT TCAGACTTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37072497	NES08364576	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	C	T	T	T	T	T	T		C	T	T	T		T
ss323598003	CHEV_11_24125544	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179878					SNP	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37072497	NES08364576	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:24175544 () rs orientation: forward

Symbol	Name	Function Class
D11Mit152	DNA segment, Chr 11, Massachusetts Institute of Technology 152	729 bp proximal
Gm33440	predicted gene, 33440	within coordinates
Rr385801	regulatory region 385801	within coordinates