rs28179890 SNP Detail

Summary

• ID
  rs28179890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:24174623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAATCTCCT GGTTGTCAGT
  GCTAGAATGG CCCCTGGGAC GGGCTTAGGA GGAAAGGGGG TTGGGGTGGG GTATTTACTG
  GTTCACACAG TAGTTCTTCC TCAGGGGAAA GGCTCCTGGC TTCCCTTCTT AGGGATCCCA
  TGTTGATCCT TTAACCAGTC AGAGGGACAA GTAGACTGAT GAGCCTAGGC CAGTAGCTCC
  W
  CTCTCTACTT GGAAGAGGAT GGGTTACTAG GAATGGCAAT GGAAGCATGG CATCAGTGCG
  GGAGAGCAGG CTGCCCGCAG AGAAGGACGC TGCTGTCCTC ATGGAGAGCA TCTCTCGGCC
  ATTCTTCTTT CCTTCTGGTC TGTCTGCTGT GGTTGGATCT TGAAAGTTTC AGAGGCATTA
  CCTGGAGGTA GTGGAACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss37072509	NES08364590	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	T	T	T	T	T		T	T	T		T
ss323597979	CHEV_11_24124623	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs28179890					SNP	T	T	T	A	T	T	T	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37072509	NES08364590	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:24174623 () rs orientation: forward

Symbol	Name	Function Class
D11Mit152	DNA segment, Chr 11, Massachusetts Institute of Technology 152	1650 bp proximal
Gm33440	predicted gene, 33440	within coordinates
Rr385801	regulatory region 385801	93 bp upstream