rs28179891 SNP Detail

Summary

• ID
  rs28179891
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:24174607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCTGATAT TAGTTGCAAA
  TCTCCTGGTT GTCAGTGCTA GAATGGCCCC TGGGACGGGC TTAGGAGGAA AGGGGGTTGG
  GGTGGGGTAT TTACTGGTTC ACACAGTAGT TCTTCCTCAG GGGAAAGGCT CCTGGCTTCC
  CTTCTTAGGG ATCCCATGTT GATCCTTTAA CCAGTCAGAG GGACAAGTAG ACTGATGAGC
  M
  TAGGCCAGTA GCTCCTCTCT CTACTTGGAA GAGGATGGGT TACTAGGAAT GGCAATGGAA
  GCATGGCATC AGTGCGGGAG AGCAGGCTGC CCGCAGAGAA GGACGCTGCT GTCCTCATGG
  AGAGCATCTC TCGGCCATTC TTCTTTCCTT CTGGTCTGTC TGCTGTGGTT GGATCTTGAA
  AGTTTCAGAG GCATTACCTG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37072510	NES08364589	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	A	C	C	C	C	C	C		C	C	C	C		C
ss323597978	CHEV_11_24124607	CHEVERUD	SCREENING_POP	f	SNP											C					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28179891					SNP	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37072510	NES08364589	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:24174607 () rs orientation: forward

Symbol	Name	Function Class
D11Mit152	DNA segment, Chr 11, Massachusetts Institute of Technology 152	1666 bp proximal
Gm33440	predicted gene, 33440	within coordinates
Rr385801	regulatory region 385801	109 bp upstream