rs28189397 SNP Detail

Summary

• ID
  rs28189397
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105058484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAGTTCTT CGGAGACCCT
  CTCATCCCTT GGGGCTGGTG GGAGGGGGCA TCTATTTGTG ATTTAACAAA CAGGCATTGA
  CCGCCTCTGT CTAGGGTTTC GTTTGTTCCC TCTCCACCGC CCACCTGTGT CACTCCCAAC
  TGCCTGGAAA GAGATGAGGC TGGCAGCAGT TCCCTTCTAG CTACGCACAG ACCTTGGGGT
  W
  CATGACTATT TGAAATCAGT ATTTAGGATG AAGCTGACGA GTCTCCAGTT TAAATAACAG
  CGTGTATGGG TCTGAGGGAC AGAGTCTGTG TGAGTCAGCG TGTAGCAGGC GGGGACAGAG
  TCAGATCCTT TTATGAGCTC AGGGACTAGA AACGAATTTG CCTTATCTTA AATGCTCTTC
  AGCGGCTATA TGAAGTAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38295328	NES09518607	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189397					SNP	A	A	A	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295328	NES09518607	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105058484 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	within coordinates
Plpp3	phospholipid phosphatase 3	within coordinates
Rr596555	regulatory region 596555	within coordinates
Rr596556	regulatory region 596556	1964 bp proximal