rs28189407 SNP Detail

Summary

• ID
  rs28189407
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105057164 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGTCATAT TTCGTTACAG
  ATGGTTGTGA GCCACCATGT GGTTGCTGGG ATTTGAACCT TTGGAAGAGC AGTCAGTGCT
  CTTAACCACT GAGCCATCTC ACCAGCCCCC ACGCTTTCTT TTCTGCAGTG CTATGTTGTC
  TGTGGGGTAG CTTTTCTTTG TGTATTCTCT TATTGGCCCC TGGTAGTCAT CCTGGGAGAA
  W
  GAACATTAAG AGCCGAGACA ACTGAGGCTA AGGATAATCA GTGACTTCCA TGTAACTAGC
  TAAGTCAGGG CAATCGGCTT GATCCTACAA CCAAGGCTTT CAAAGTCGGA ACACCTCTGC
  TGGCCTCTGC AAATCTGCCC CTCTTCCACA GCTATTTAGC AGGCCTCTAG TGTACCAGGG
  GTGGGGTATT GATGGTGAAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38295338	NES09518597	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189407					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295338	NES09518597	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105057164 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	769 bp upstream
Plpp3	phospholipid phosphatase 3	within coordinates
Rr596555	regulatory region 596555	751 bp proximal