rs28189412 SNP Detail

Summary

• ID
  rs28189412
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105056167 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTGCCC ACTCTCCCAG
  CTTGACTGCC CCATGAGCCT GGATGTCTTC ACTAAGCATC GGACTTGTGA CCAGAGAGCC
  TGAGGGACAG TCATGCCAAG GGAGCAGGTT GCAGAACTGA AAAATCAGCT TGCTGCGTAA
  CCGCCCTGGA CCTGCTGCTC AATGTCAGGT CTGTTGCAAA CCGTAAGAGA AGCCTTGACT
  K
  CTTTGGATGC CCTTGATCCA GTCTGCCCAG ATGCCACACA GAGGAATGGA ATGGTGGTGG
  AGGAGGAGAT CAGGGTGATT TCGAGATGCA AGTTGTCAGA GGTTGTAGAG AAAGCAGACA
  CCTTTCTGAG GCAGAAGCTA TGGAAAAACT CTCGTCATTT TGACCTCTTT TTCAGATGTG
  TATCAGATTC TGGAATTATA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38295344	NES09518687	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28189412					SNP	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38295344	NES09518687	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105056167 () rs orientation: forward

Symbol	Name	Function Class
6030451C04Rik	RIKEN cDNA 6030451C04 gene	1766 bp upstream
Plpp3	phospholipid phosphatase 3	within coordinates
Rr376951	regulatory region 376951	1007 bp downstream
Rr596555	regulatory region 596555	1748 bp proximal