rs28190306 SNP Detail

Summary

• ID
  rs28190306
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467875 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATCGAAG CCCAAAGATT
  GTTGCTAAAG GATTGGGAAT TTGCATTGTG CTAAGACAAG ACTACTAATC CCTTATATCA
  TGTCTTCAAT GGTTGCATAT GAATTATCTG TAGTAGGGTG CACGGCTATT ATTTAACAAG
  TTTGATGTGG TGTGGGTGGC TTCCAAAGTA AATCTTAAGA AGCAGTGCCT GTTCTTGAAC
  R
  CATGATTACT AATCTGCCTC TTAGTCTTAC CCATCACTAC TCATGCGGTC TTACATTATT
  GAAGGCTGTT CCAATTCTCT GTTTCAGTTA TCTGGTTTGA AAAGTGAGCA GGGCAATAAT
  ATATACAAGG CTTGCTTGTC TTCTAACTTC TTCTTTTTCT ACAAGAATGA TGCATTTCCA
  TTTGTCCCAC CCCTCAGGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141428	NES08462386	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190306					SNP	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141428	NES08462386	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467875 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1577 bp proximal
Rr452991	regulatory region 452991	1956 bp proximal
Tssr103716	transcription start site region 103716	1683 bp downstream
Tssr109684	transcription start site region 109684	1981 bp upstream
Tssr109685	transcription start site region 109685	1940 bp upstream
Tssr109686	transcription start site region 109686	1871 bp upstream
Tssr109687	transcription start site region 109687	1817 bp upstream
Tssr109688	transcription start site region 109688	1776 bp upstream
Tssr109689	transcription start site region 109689	1734 bp upstream
Tssr109690	transcription start site region 109690	1725 bp upstream
Tssr109691	transcription start site region 109691	1711 bp upstream
Tssr109692	transcription start site region 109692	1683 bp upstream
Tssr109693	transcription start site region 109693	1566 bp upstream
Tssr109694	transcription start site region 109694	1139 bp upstream
Tssr109695	transcription start site region 109695	1091 bp upstream
Tssr109696	transcription start site region 109696	95 bp upstream
Tssr109697	transcription start site region 109697	88 bp downstream
Tssr109698	transcription start site region 109698	1371 bp downstream
Tssr109699	transcription start site region 109699	1418 bp downstream
Tssr109700	transcription start site region 109700	1447 bp downstream
Tssr109701	transcription start site region 109701	1480 bp downstream
Tssr109702	transcription start site region 109702	1537 bp downstream
Tssr109703	transcription start site region 109703	1547 bp downstream
Tssr109704	transcription start site region 109704	1571 bp downstream