rs28190307 SNP Detail

Summary

• ID
  rs28190307
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCCCTTTGG TGACACAAAG TCCCTTGAAG TGAAATGAGG
  CTCCTAATAG TCCACATTTA TATAAATGCC TGATTAAAGG ACACACTGAA GAAAAAACCA
  Y
  CAGGGATGTT GAGTGACATC CAGCAATGTA TCACTTTTTA AAATCCATAA TAATCCTTTA
  TCCCAAATAT ATCGAAGCCC AAAGATTGTT GCTAAAGGAT                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141429	NES08462385	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190307					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141429	NES08462385	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467607 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Rr452990	regulatory region 452990	1845 bp proximal
Tssr103716	transcription start site region 103716	1415 bp downstream
Tssr109682	transcription start site region 109682	1787 bp upstream
Tssr109683	transcription start site region 109683	1739 bp upstream
Tssr109684	transcription start site region 109684	1713 bp upstream
Tssr109685	transcription start site region 109685	1672 bp upstream
Tssr109686	transcription start site region 109686	1603 bp upstream
Tssr109687	transcription start site region 109687	1549 bp upstream
Tssr109688	transcription start site region 109688	1508 bp upstream
Tssr109689	transcription start site region 109689	1466 bp upstream
Tssr109690	transcription start site region 109690	1457 bp upstream
Tssr109691	transcription start site region 109691	1443 bp upstream
Tssr109692	transcription start site region 109692	1415 bp upstream
Tssr109693	transcription start site region 109693	1298 bp upstream
Tssr109694	transcription start site region 109694	871 bp upstream
Tssr109695	transcription start site region 109695	823 bp upstream
Tssr109696	transcription start site region 109696	166 bp downstream
Tssr109697	transcription start site region 109697	356 bp downstream
Tssr109698	transcription start site region 109698	1639 bp downstream
Tssr109699	transcription start site region 109699	1686 bp downstream
Tssr109700	transcription start site region 109700	1715 bp downstream
Tssr109701	transcription start site region 109701	1748 bp downstream
Tssr109702	transcription start site region 109702	1805 bp downstream
Tssr109703	transcription start site region 109703	1815 bp downstream
Tssr109704	transcription start site region 109704	1839 bp downstream