rs28190308 SNP Detail

Summary

• ID
  rs28190308
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467419 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCAAGCCC TTGCTGTGCC
  TTCAGACTGC TCTGGACTTC TTTTGTCTCT GTTGCTGGAA GAGACAGAGG GCAGAGGTTA
  GCATCATTGT CTTAGCATCT CTACTCACCA TCCCCACCCC GATTCTTGCC AAGGCTGAGA
  AGGCTCTGCT GAGGACCACC ATCACACACT TGGAGTCTAG GATCTGCTCT AGACTCATTT
  M
  TCCCCTTAGG TGACATGAGA TTTTTCTGGG ATCTTAAAAA ACAAAACAAA ACAAAAAAAC
  CAAAAACTCT ATTGACTTGA AGCACAAACC CCTTTGGTGA CACAAAGTCC CTTGAAGTGA
  AATGAGGCTC CTAATAGTCC ACATTTATAT AAATGCCTGA TTAAAGGACA CACTGAAGAA
  AAAACCATCA GGGATGTTGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141430	NES08462397	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190308					SNP	A	A	A	A	A	A	A	A	A	A	C	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141430	NES08462397	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467419 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	1913 bp downstream
Tssr103715	transcription start site region 103715	1863 bp downstream
Tssr103716	transcription start site region 103716	1227 bp downstream
Tssr109680	transcription start site region 109680	1993 bp upstream
Tssr109681	transcription start site region 109681	1874 bp upstream
Tssr109682	transcription start site region 109682	1599 bp upstream
Tssr109683	transcription start site region 109683	1551 bp upstream
Tssr109684	transcription start site region 109684	1525 bp upstream
Tssr109685	transcription start site region 109685	1484 bp upstream
Tssr109686	transcription start site region 109686	1415 bp upstream
Tssr109687	transcription start site region 109687	1361 bp upstream
Tssr109688	transcription start site region 109688	1320 bp upstream
Tssr109689	transcription start site region 109689	1278 bp upstream
Tssr109690	transcription start site region 109690	1269 bp upstream
Tssr109691	transcription start site region 109691	1255 bp upstream
Tssr109692	transcription start site region 109692	1227 bp upstream
Tssr109693	transcription start site region 109693	1110 bp upstream
Tssr109694	transcription start site region 109694	683 bp upstream
Tssr109695	transcription start site region 109695	635 bp upstream
Tssr109696	transcription start site region 109696	354 bp downstream
Tssr109697	transcription start site region 109697	544 bp downstream
Tssr109698	transcription start site region 109698	1827 bp downstream
Tssr109699	transcription start site region 109699	1874 bp downstream
Tssr109700	transcription start site region 109700	1903 bp downstream
Tssr109701	transcription start site region 109701	1936 bp downstream
Tssr109702	transcription start site region 109702	1993 bp downstream