rs28190310 SNP Detail

Summary

• ID
  rs28190310
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83467311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCTGTTCT GTCATCGGGT
  AGGGGGATGC TCTGGTGTTG ATCTGCAACC ACCTGGTGCT TCTCAGTACA AGCTGTAATG
  AAATATTTAC CCATGTGAAA CATTTCAATT TCAAGCCCTT GCTGTGCCTT CAGACTGCTC
  TGGACTTCTT TTGTCTCTGT TGCTGGAAGA GACAGAGGGC AGAGGTTAGC ATCATTGTCT
  Y
  AGCATCTCTA CTCACCATCC CCACCCCGAT TCTTGCCAAG GCTGAGAAGG CTCTGCTGAG
  GACCACCATC ACACACTTGG AGTCTAGGAT CTGCTCTAGA CTCATTTATC CCCTTAGGTG
  ACATGAGATT TTTCTGGGAT CTTAAAAAAC AAAACAAAAC AAAAAAACCA AAAACTCTAT
  TGACTTGAAG CACAAACCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141432	NES08462395	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190310					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141432	NES08462395	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83467311 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	1805 bp downstream
Tssr103715	transcription start site region 103715	1755 bp downstream
Tssr103716	transcription start site region 103716	1119 bp downstream
Tssr109680	transcription start site region 109680	1885 bp upstream
Tssr109681	transcription start site region 109681	1766 bp upstream
Tssr109682	transcription start site region 109682	1491 bp upstream
Tssr109683	transcription start site region 109683	1443 bp upstream
Tssr109684	transcription start site region 109684	1417 bp upstream
Tssr109685	transcription start site region 109685	1376 bp upstream
Tssr109686	transcription start site region 109686	1307 bp upstream
Tssr109687	transcription start site region 109687	1253 bp upstream
Tssr109688	transcription start site region 109688	1212 bp upstream
Tssr109689	transcription start site region 109689	1170 bp upstream
Tssr109690	transcription start site region 109690	1161 bp upstream
Tssr109691	transcription start site region 109691	1147 bp upstream
Tssr109692	transcription start site region 109692	1119 bp upstream
Tssr109693	transcription start site region 109693	1002 bp upstream
Tssr109694	transcription start site region 109694	575 bp upstream
Tssr109695	transcription start site region 109695	527 bp upstream
Tssr109696	transcription start site region 109696	462 bp downstream
Tssr109697	transcription start site region 109697	652 bp downstream
Tssr109698	transcription start site region 109698	1935 bp downstream
Tssr109699	transcription start site region 109699	1982 bp downstream