rs28190311 SNP Detail

Summary

• ID
  rs28190311
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83466399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGCAAAT GTTATTGTTT
  GTAGGTCCGT GGTTGTGAGT TTTGCTCCAA TCTTTCAATG CATCTCTGAA CTCTCCGATC
  ACTGGGGTTG GCACAGACCT GGAACCCCCT CTTGCTGATA AAGCTGAAGA AAAAGGAGAA
  GAAAGATTAT AATCAGAGTT AATCTAGTAA AGGGGTGGTG GGAGCCCCAT CCTCTGAACC
  Y
  TCTGATTTTC CACTCAACAG TCTGTTCTTT CCAGGAGGTA GCTCAGCACC ATCATCCCCT
  CTCTGGGGCC CCCTCTAGAC CTGTGAGGGT CTCTAAGGAC TCATGGAGTG ACTCTGCTAG
  CTGTTTCCTT CTCTACACCC TGAAGTATCC CCCCTCCCAC CTGGTGAGAT CCAAGAATGG
  GTCTTCTCTG GAAGTCTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141433	NES08462394	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	T	T	C	T	T	C	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190311					SNP	T	T	C	T	T	T	C	T	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141433	NES08462394	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83466399 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccl9	C-C motif chemokine ligand 9			Intron
				Noncoding-Transcript-Variant
Tssr103714	transcription start site region 103714			893 bp downstream
Tssr103715	transcription start site region 103715			843 bp downstream
Tssr103716	transcription start site region 103716			207 bp downstream
Tssr109677	transcription start site region 109677			1889 bp upstream
Tssr109678	transcription start site region 109678			1508 bp upstream
Tssr109679	transcription start site region 109679			1224 bp upstream
Tssr109680	transcription start site region 109680			973 bp upstream
Tssr109681	transcription start site region 109681			854 bp upstream
Tssr109682	transcription start site region 109682			579 bp upstream
Tssr109683	transcription start site region 109683			531 bp upstream
Tssr109684	transcription start site region 109684			505 bp upstream
Tssr109685	transcription start site region 109685			464 bp upstream
Tssr109686	transcription start site region 109686			395 bp upstream
Tssr109687	transcription start site region 109687			341 bp upstream
Tssr109688	transcription start site region 109688			300 bp upstream
Tssr109689	transcription start site region 109689			258 bp upstream
Tssr109690	transcription start site region 109690			249 bp upstream
Tssr109691	transcription start site region 109691			235 bp upstream
Tssr109692	transcription start site region 109692			207 bp upstream
Tssr109693	transcription start site region 109693			90 bp upstream
Tssr109694	transcription start site region 109694			290 bp downstream
Tssr109695	transcription start site region 109695			340 bp downstream
Tssr109696	transcription start site region 109696			1374 bp downstream
Tssr109697	transcription start site region 109697			1564 bp downstream