rs28190312 SNP Detail

Summary

• ID
  rs28190312
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83465592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATACT ACTGGGCTAA GGCAGAATTT
  R
  TTTCATCCTA GTTGAATGTA CCTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37141436	NES08462405	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28190312					SNP	A	A	A	A	A	A	G	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141436	NES08462405	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83465592 () rs orientation: forward

Symbol	Name	Function Class
Ccl9	C-C motif chemokine ligand 9	within coordinates
Tssr103714	transcription start site region 103714	86 bp downstream
Tssr103715	transcription start site region 103715	36 bp downstream
Tssr103716	transcription start site region 103716	584 bp upstream
Tssr109677	transcription start site region 109677	1082 bp upstream
Tssr109678	transcription start site region 109678	701 bp upstream
Tssr109679	transcription start site region 109679	417 bp upstream
Tssr109680	transcription start site region 109680	166 bp upstream
Tssr109681	transcription start site region 109681	47 bp upstream
Tssr109682	transcription start site region 109682	214 bp downstream
Tssr109683	transcription start site region 109683	265 bp downstream
Tssr109684	transcription start site region 109684	291 bp downstream
Tssr109685	transcription start site region 109685	336 bp downstream
Tssr109686	transcription start site region 109686	399 bp downstream
Tssr109687	transcription start site region 109687	448 bp downstream
Tssr109688	transcription start site region 109688	495 bp downstream
Tssr109689	transcription start site region 109689	538 bp downstream
Tssr109690	transcription start site region 109690	551 bp downstream
Tssr109691	transcription start site region 109691	561 bp downstream
Tssr109692	transcription start site region 109692	592 bp downstream
Tssr109693	transcription start site region 109693	703 bp downstream
Tssr109694	transcription start site region 109694	1097 bp downstream
Tssr109695	transcription start site region 109695	1147 bp downstream