rs28190548 SNP Detail

Summary

• ID
  rs28190548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:83335512 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGAGTAAG GGGTATGTGT
  AGCCCTGGTT GTTGGTTTTA TCCAAGTGCG CAACTATCCC CAGAAATCTC TCCCACTCAA
  CAGCCCAGGA AAGAGTGACC TTCTGAGATA ATGTGAGAGT GGGAGACCGA AGGGTTTTGA
  GCTAAGGGCA GAGGTTTGTT CTTATGGATG GCTTGGACCT GATGGAGAGA GAAAGCAGGA
  Y
  TCGCGGATAT TCAGATTTCA AGGGAGCCTT AGGGGCTTCA GGATAAGGAA GGACCGGGAG
  CAAGGAACTG AAGAGGGGTG GAGGTGGGGA TATCCTATTT GAGGAGCCAG AGTCTGAAGA
  CCCCAGAGGC TCACCGTACA GGCTCTGCAC CGCCAGCACA TCGTCCCAGC TGAGCAAGGC
  GTCGCGGCCC AGCTTCTTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss37141693	NES08465194	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs28190548					SNP	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37141693	NES08465194	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83335512 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3415	CpG island 3415	1688 bp distal
Cpgi3416	CpG island 3416	within coordinates
Mmp28	matrix metallopeptidase 28 (epilysin)	Intron
Rr452961	regulatory region 452961	535 bp proximal