rs28191176 SNP Detail

Summary

• ID
  rs28191176
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82960745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTCCAGG ACCTGGAGGA
  AACTGGAGGG AGACCCTGTG TCAGACCAGA GTTGCCTGCA AGCATAGCCT TCCCTGAAGT
  GGAAGGAGAA TGGCACCTGG AGGATTTGGC TGCTGCATTG TTTAACAGGA CAGAATTTCA
  GTACGAGGAA ACTTTCCCCT TTACCAGATC CAGATATGTT GAAGTTACAT TGCTTTCAGC
  R
  AAACGCCTGC GAAAACGCAT CAAAGAGCTC CTCCCTCAAA CTGTTTCTGC TTTTGCAAAC
  ACGGATGGGG GATTTTTGTT CATTGGTTTG GATGGCAAAA CCCAGCAAAT TATTGGTTTT
  GAAGCAGAGA AGAGCGATCT CGTGCTTCTA GAGAGTGAAA TAGAAAAGCA CATCCGGCAG
  CTGCCTGTCA CTCACTTCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37142395	NES08465197	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	G	A	A	G	G	G	G	G	G	G	G
ss38856904	mCV24260315	ABI	CRAMUS_MOUSE	f	SNP		A	A					G
ss132466446	ENSMUSSNP4435839	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191176					SNP	A	A	A	G	G	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142395	NES08465197	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82960745 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	1659 bp distal
Gm20234	predicted gene, 20234	1932 bp upstream
Rr452897	regulatory region 452897	1405 bp distal
Rr452898	regulatory region 452898	817 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103642	transcription start site region 103642	1499 bp downstream
Tssr103643	transcription start site region 103643	623 bp downstream
Tssr103644	transcription start site region 103644	570 bp downstream
Tssr103645	transcription start site region 103645	399 bp downstream
Tssr103646	transcription start site region 103646	325 bp downstream
Tssr103647	transcription start site region 103647	169 bp downstream
Tssr103648	transcription start site region 103648	89 bp downstream
Tssr103649	transcription start site region 103649	41 bp downstream