rs28191178 SNP Detail

Summary

• ID
  rs28191178
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82960223 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTGATCT GGAAGCCAAA TATGCTAAGC TGGGTCTAAA
  TCTCGGAGCA ATCACTTTTG GAGAGAAGGA TAGGAAGAAA ATGAAGAATT CTCACCTCAG
  R
  AAACAGGAGA ATGCAAACAT CTCTCTAGCT GTATGTGCTC TCCTGAATTC GGGAGGTGGA
  GCAATCAAGG TTAAAATTGA AAATGAAAAT TATAGTCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37142397	NES08465195	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	A	A		G	A	A	A	G	G	A
ss38685204	mCV24260304	ABI	CRAMUS_MOUSE	f	SNP		A	A					A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191178					SNP	A	A	A	G	A	A	A	A	G	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142397	NES08465195	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82960223 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	1137 bp distal
Gm20234	predicted gene, 20234	1410 bp upstream
Rr452896	regulatory region 452896	1812 bp distal
Rr452897	regulatory region 452897	883 bp distal
Rr452898	regulatory region 452898	295 bp distal
Slfn2	schlafen 2	within coordinates
Tssr103642	transcription start site region 103642	977 bp downstream
Tssr103643	transcription start site region 103643	101 bp downstream
Tssr103644	transcription start site region 103644	48 bp downstream
Tssr103645	transcription start site region 103645	111 bp upstream
Tssr103646	transcription start site region 103646	180 bp upstream
Tssr103647	transcription start site region 103647	349 bp upstream
Tssr103648	transcription start site region 103648	419 bp upstream
Tssr103649	transcription start site region 103649	464 bp upstream