rs28191179 SNP Detail

Summary

• ID
  rs28191179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82959550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATACAGATTC CACTGAGGGT TTATTGAAAG AAGACTGAAT
  ACAATATTAA GGACAAGAAA AGAGATGAAC AAGGATTAAA ATGGGATTGA ACATCTGAAC
  R
  GGCTCAACCA TACCTGTAAC ATTACGTCTA AAAACTAGTA GGCATAAAAG TTCTGTTAAT
  AAGTGCAAAG TGCGGAAAAA CAACAACCAT TTCTCCACC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37142398	NES08465227	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G	A	G	G	G	G	A	G	G
ss38807163	mCV24260302	ABI	CRAMUS_MOUSE	f	SNP		G	G					A
ss132466434	ENSMUSSNP791755	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191179					SNP	G	G	G	A	G	G	G	A	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142398	NES08465227	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82959550 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	464 bp distal
Gm20234	predicted gene, 20234	737 bp upstream
Rr452895	regulatory region 452895	1473 bp distal
Rr452896	regulatory region 452896	1139 bp distal
Rr452897	regulatory region 452897	210 bp distal
Rr452898	regulatory region 452898	357 bp proximal
Slfn2	schlafen 2	within coordinates
Tssr103642	transcription start site region 103642	304 bp downstream
Tssr103643	transcription start site region 103643	554 bp upstream
Tssr103644	transcription start site region 103644	603 bp upstream
Tssr103645	transcription start site region 103645	784 bp upstream
Tssr103646	transcription start site region 103646	853 bp upstream
Tssr103647	transcription start site region 103647	1022 bp upstream
Tssr103648	transcription start site region 103648	1092 bp upstream
Tssr103649	transcription start site region 103649	1137 bp upstream
Tssr109639	transcription start site region 109639	1901 bp upstream
Tssr109640	transcription start site region 109640	1433 bp upstream