rs28191180 SNP Detail

Summary

• ID
  rs28191180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:82958984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAT CCGTGTGCTG GGAAAGTAGG
  Y
  GGGCACCAGC ATCTATGGCT CTCAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37142399	NES08465240	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	C	T	T	T	T	T	T	T
ss132466422	ENSMUSSNP1704689	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191180					SNP	C	C	C	T	C	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37142399	NES08465240	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:82958984 () rs orientation: forward

Symbol	Name	Function Class
D11Pas76	DNA segment, Chr 11, Pasteur Institute 76	within coordinates
Gm20234	predicted gene, 20234	171 bp upstream
Rr452895	regulatory region 452895	907 bp distal
Rr452896	regulatory region 452896	573 bp distal
Rr452897	regulatory region 452897	335 bp proximal
Rr452898	regulatory region 452898	923 bp proximal
Slfn2	schlafen 2	within coordinates
Tssr103640	transcription start site region 103640	1724 bp downstream
Tssr103641	transcription start site region 103641	1622 bp downstream
Tssr103642	transcription start site region 103642	240 bp upstream
Tssr103643	transcription start site region 103643	1120 bp upstream
Tssr103644	transcription start site region 103644	1169 bp upstream
Tssr103645	transcription start site region 103645	1350 bp upstream
Tssr103646	transcription start site region 103646	1419 bp upstream
Tssr103647	transcription start site region 103647	1588 bp upstream
Tssr103648	transcription start site region 103648	1658 bp upstream
Tssr103649	transcription start site region 103649	1703 bp upstream
Tssr109639	transcription start site region 109639	1335 bp upstream
Tssr109640	transcription start site region 109640	867 bp upstream