rs28191988 SNP Detail

Summary

• ID
  rs28191988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:42313656 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTTTCTGA GGTCAATATG
  GTGAGTATTA ATGCTCATAG ATACGTCTCT ATAATGGGGA CTGTGTGGGG GCTGTGCAGT
  TGCTGGGGGG GGTGGAGTAT GTTTGAATAT GTGTATAATG TGGGGACAGG AGAATAGTAT
  ATTGCTCTGG AATTCATGGC ATGTGTAATT ACAAAACAAC TGCTGGTTTT TTGCACTTTT
  Y
  CCAATTTGGA TCCAATACAG AGTGAGTAAA GTATCTCACA CATTCACTTG TACAGGCAGC
  AATATGCTGG AAGGCCCCCT GCAGAAGTGA TGGCTCTCAC AGCTTCCTGA AAGCCTCAGT
  TTGTCGAGTT ACAGTTCTGT GTTTGGGGCT TAGTCATGGT AAAAGGAGCA TTTAAATGTG
  ACTAAATAAA TAAATGAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37131609	NES08333129	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C	T	T	C	C	T		C	T	T	C
ss132042387	ENSMUSSNP546098	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C						T				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191988					SNP	C	C	C	C	C	C	C	T	T	C	C	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37131609	NES08333129	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42313656 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2			Intron
				Noncoding-Transcript-Variant
Gm34591	predicted gene, 34591			1624 bp upstream
Rr445406	regulatory region 445406			1469 bp distal
Rr445407	regulatory region 445407			499 bp proximal
Rr445408	regulatory region 445408			625 bp proximal
Tssr100979	transcription start site region 100979			1974 bp downstream
Tssr100980	transcription start site region 100980			1589 bp downstream
Tssr100981	transcription start site region 100981			1545 bp downstream
Tssr100982	transcription start site region 100982			1508 bp downstream
Tssr100983	transcription start site region 100983			1496 bp downstream