rs28191989 SNP Detail

Summary

• ID
  rs28191989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42313421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGACCAG CACATGTGTG
  CATATTCCTA GAAGAGTATC CCCACATTCA TACTGCAAAG ATATGGGAAA GTAATGAATA
  TATGGATTAG CTCTACAGAG GGGGTTTCTT TAGAGTTCCC AGTGACAACT CTTCGTATGA
  ATGACTAAGT TCTGAGAAGT CACATGGCTG ACCATCTTGG TTTGCAGGTC CCCCTGTGGC
  Y
  GTAGGAATGA ACATTGATAT TGCCAGCATT GATATGGTTT CTGAGGTCAA TATGGTGAGT
  ATTAATGCTC ATAGATACGT CTCTATAATG GGGACTGTGT GGGGGCTGTG CAGTTGCTGG
  GGGGGGTGGA GTATGTTTGA ATATGTGTAT AATGTGGGGA CAGGAGAATA GTATATTGCT
  CTGGAATTCA TGGCATGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37131610	NES08333128	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191989					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37131610	NES08333128	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42313421 () rs orientation: forward

Symbol	Name	Function Class
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	1389 bp upstream
Rr445406	regulatory region 445406	1234 bp distal
Rr445407	regulatory region 445407	734 bp proximal
Rr445408	regulatory region 445408	860 bp proximal
Tssr100978	transcription start site region 100978	1815 bp downstream
Tssr100979	transcription start site region 100979	1739 bp downstream
Tssr100980	transcription start site region 100980	1354 bp downstream
Tssr100981	transcription start site region 100981	1310 bp downstream
Tssr100982	transcription start site region 100982	1273 bp downstream
Tssr100983	transcription start site region 100983	1261 bp downstream