rs28191990 SNP Detail

Summary

• ID
  rs28191990
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GACCAGACTT TGTAACCGCT CTCGTTCTCC TTCACCGTGA
  TACATCTTTG TTCCCAGTCT GAGGTTTCTT GAGATACAAA CCTCTTAAGT TTAGTTAACA
  K
  TGTGCCCAGC CGGGGATGTC TTATAATGTG AGTATTTTTG AGGACACAGT GTGCAGGCGG
  TTGGCTGAGA GGTGGCTTCA ACTCTCTGTG CCCATCTAC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37131611	NES08333127	PERLEGEN	MM_PANEL2	f	SNP	G		G	G	G	G	G		G	T	G	G	T	G	T	T	G
ss38816988	mCV23022375	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		T
ss132042384	ENSMUSSNP4804981	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191990					SNP	G	G	G	G	G	G	G	G	G	T	G	G	T	G	T	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37131611	NES08333127	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1453 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	751 bp upstream
Rr445406	regulatory region 445406	596 bp distal
Rr445407	regulatory region 445407	1372 bp proximal
Rr445408	regulatory region 445408	1498 bp proximal
Tssr100977	transcription start site region 100977	1513 bp downstream
Tssr100978	transcription start site region 100978	1177 bp downstream
Tssr100979	transcription start site region 100979	1101 bp downstream
Tssr100980	transcription start site region 100980	716 bp downstream
Tssr100981	transcription start site region 100981	672 bp downstream
Tssr100982	transcription start site region 100982	635 bp downstream
Tssr100983	transcription start site region 100983	623 bp downstream