rs28191991 SNP Detail

Summary

• ID
  rs28191991
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:42312709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAACAGAT CCAAACTTAA GCCAGTTTCT GTCCAGCACT
  TGAGAGGTCT TTCAAGAAGA CCCCCTTAGA GTGTGACCAG ACTTTGTAAC CGCTCTCGTT
  Y
  TCCTTCACCG TGATACATCT TTGTTCCCAG TCTGAGGTTT CTTGAGATAC AAACCTCTTA
  AGTTTAGTTA ACAGTGTGCC CAGCCGGGGA TGTCTTATA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37131612	NES08333126	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	C	C	C		C	T	C	C	T	C	T	T	C
ss38681047	mCV23022200	ABI	CRAMUS_MOUSE	f	SNP		C	C					C		T
ss132042381	ENSMUSSNP6330294	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28191991					SNP	C	C	C	C	C	C	C	C	C	T	C	C	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37131612	NES08333126	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:42312709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2744	CpG island 2744	1379 bp distal
Gabrb2	gamma-aminobutyric acid type A receptor subunit beta 2	within coordinates
Gm34591	predicted gene, 34591	677 bp upstream
Rr445406	regulatory region 445406	522 bp distal
Rr445407	regulatory region 445407	1446 bp proximal
Rr445408	regulatory region 445408	1572 bp proximal
Tssr100976	transcription start site region 100976	1927 bp downstream
Tssr100977	transcription start site region 100977	1439 bp downstream
Tssr100978	transcription start site region 100978	1103 bp downstream
Tssr100979	transcription start site region 100979	1027 bp downstream
Tssr100980	transcription start site region 100980	642 bp downstream
Tssr100981	transcription start site region 100981	598 bp downstream
Tssr100982	transcription start site region 100982	561 bp downstream
Tssr100983	transcription start site region 100983	549 bp downstream