rs28194676 SNP Detail

Summary

• ID
  rs28194676
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77718015 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCACCCTGGT CCACAAAGTT AGACCCTATT TCAAAATAAA
  TAAGCAGAGA AAAGCCTCCT TTGAGCCTTG GCTGTGCACA GACTTACAGA CTTCATCACA
  S
  TGAATCCTCC AGGGAGTGAG GGCAGTATGG GGGCTGACCT TGCTCCCGTG CCTTCTGAGG
  GGATAAGGAT TGAGGAGAAG TTCTAAGTAT GAATGCACAT                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss37153595	NES08461365	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs28194676					SNP	C	C	C	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37153595	NES08461365	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77718015 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm40	DNA segment, Chr 11, Boehm 40	739 bp distal
Myo18a	myosin XVIIIA	within coordinates
Rr236558	regulatory region 236558	within coordinates
Rr245105	regulatory region 245105	1029 bp proximal
Rr251684	regulatory region 251684	within coordinates
Rr251685	regulatory region 251685	1987 bp proximal