rs28196028 SNP Detail

Summary

• ID
  rs28196028
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101946878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTGTTG AGATGGCATG
  ATTGTTCCAT TCAGGATGTA AGCAAATCCA TCATCTTTCT ACTTCCCTGA TACAGTTGTG
  AGCTGAATCA TTTTGCCACT TGTCTACTTG TATTTCCTCA TTTGATTGGC TTCTCAGTTT
  ATTTCAAGCT TGGCATATTT TGCTAAGATG GATGATTTTA AATTTCTCTA GAGGTTACCT
  K
  CTTCAGTGTG CTTGTTTACT TTCCTAGTAG TGTCGGTTTT GATTGAGGAA GAAGAAATAT
  ATCATACAGA GTTTTATGTT CTTGGGGTCG TTTGTCCAGG TAGAGACACT ATTTAATAAT
  GACAGGGCCT GTTAGCATAC ATTTACATTT GGGAAAGACA CTTTTGTGTT GGCTCACAAT
  ACATTTAAAA TGGAGAAGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310365	NES09528126	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	T		G	G	G	G		T
ss321232353	CHEV_4_101762286	CHEVERUD	SCREENING_POP	f	SNP										G					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28196028					SNP	G	G	G	G	G	G	G	G	T	G	G	G	G	G	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310365	NES09528126	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101946878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	1328 bp distal
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr99646	regulatory region 99646	677 bp distal
Tssr38021	transcription start site region 38021	1987 bp downstream
Tssr38022	transcription start site region 38022	1947 bp downstream