rs28196032 SNP Detail

Summary

• ID
  rs28196032
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101945833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGCGGCTG CAGGATGCTC
  CAGCACACCT AGGTAGCTCG GTCCCCAAGC CTCTGCAGAA TCAAGGCTCT GCCCAGAACT
  TTTGGCAAGC TCTGGTGCCT GGGTTGCCTT AAGAAGCTCC AGGACTGGGG AGCAGGAGGC
  CCCGCTGCCC CTCACTTTAC TTTTCTTCTG CTCTGTCTCC TCTCCCTGTT CTGTTTCCTT
  Y
  TTTCCCTACA CGCCACCTTC CATGTGCTAC ACTGTACTGT ACGTAAAAAT CGGAGTCCAA
  GGTAACCACC GTGCTGACCA AGTATAAAGA AGAAGGTGGG GAGGACTAGC TCTCAATCAG
  GTGCTGATCT TCCGCATGAC ACAGCATGCC TGGGGAGGCG ATTTTAAAGC AAGACTGACT
  TTAAAAAATT ATATTAGGTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38310369	NES09528120	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196032					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310369	NES09528120	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101945833 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	283 bp distal
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr99646	regulatory region 99646	within coordinates
Tssr38021	transcription start site region 38021	942 bp downstream
Tssr38022	transcription start site region 38022	902 bp downstream