rs28196033 SNP Detail

Summary

• ID
  rs28196033
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101945493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCATCCT GGCGCGGGAG
  CGCAGCTTGA GGTTGAGGAT GCCTCGCCTC CCTCTGCACT GCCCCGCACC GTGGCCGCAC
  CGACTGCGGT TTCTGGAGCT GGGCGGCCGG GATGGCAGCC TAGGCGCGTC CAGGTCGCCT
  TTGGGAACCA GTCCTCCCAT GGGCCCCTTC CCTTGGGTGC CCTCGGTCTC TGTCGCTCGG
  Y
  CAGTAGACCT CTTGGCCAGT AGCTGGGAAG CAGAACGAGC CTAAGGACTT GGCTAGGCAG
  AAGGATTCCC TGAGAGGAGC CCCCAAGTGG GCAGTAATGA GCTGCCTGTG CCTGGGGACC
  AACTGCCCAG AGTTTGCCCG CTGCGGCTGC AGGATGCTCC AGCACACCTA GGTAGCTCGG
  TCCCCAAGCC TCTGCAGAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310370	NES09528117	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	C		C	T	T	C		C
ss321232352	CHEV_4_101760901	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28196033					SNP	T	T	T	T	T	T	C	T	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310370	NES09528117	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101945493 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	within coordinates
Pde4b	phosphodiesterase 4B, cAMP specific	within coordinates
Rr99646	regulatory region 99646	within coordinates
Tssr38021	transcription start site region 38021	602 bp downstream
Tssr38022	transcription start site region 38022	562 bp downstream