rs28196039 SNP Detail

Summary

• ID
  rs28196039
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101944120 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACTTTAACT CCCTGACCCT
  GTCTCCTTCC CACACAAAGA AAATCGCCTT CACTTGAACA ACTGTGACTT GTTTCATAGC
  TCATAATTCT GCCTGTTTTG GGTTATATGG CTGTTTCTTC CATTTGATGA CAAACTGCTG
  GGATGCAGAT TAGTGTCCTA AATACCCTAA CCATACCTCT GGGCTTCGTG TAAAATGCCC
  R
  GAAGGTTATT GGAATGAATT GAGAATAGGC TAAAGTATCC ATGAAAAGTC TTTCTAGTAT
  CTAATTAGTT TGGTACTTCA AGGTACAATC ACCCCTTCCC TAGCTTCCTC TTGTCCTTGC
  CCAGCTTCCT TCTCTTGCAT CCCGACTGAA AGGACTGGAC AACTAGGAAC AACACACACA
  CACACACACA CACACACACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38310376	NES09528110	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196039					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310376	NES09528110	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101944120 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	385 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	620 bp upstream
Rr99646	regulatory region 99646	280 bp proximal
Tssr38021	transcription start site region 38021	692 bp upstream
Tssr38022	transcription start site region 38022	792 bp upstream