rs28196040 SNP Detail

Summary

• ID
  rs28196040
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101944081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGCCTTT ATGTGCCCTT
  AGTATGCATA GTTCAGGAAG ACTTTAACTC CCTGACCCTG TCTCCTTCCC ACACAAAGAA
  AATCGCCTTC ACTTGAACAA CTGTGACTTG TTTCATAGCT CATAATTCTG CCTGTTTTGG
  GTTATATGGC TGTTTCTTCC ATTTGATGAC AAACTGCTGG GATGCAGATT AGTGTCCTAA
  M
  TACCCTAACC ATACCTCTGG GCTTCGTGTA AAATGCCCGG AAGGTTATTG GAATGAATTG
  AGAATAGGCT AAAGTATCCA TGAAAAGTCT TTCTAGTATC TAATTAGTTT GGTACTTCAA
  GGTACAATCA CCCCTTCCCT AGCTTCCTCT TGTCCTTGCC CAGCTTCCTT CTCTTGCATC
  CCGACTGAAA GGACTGGACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38310377	NES09528109	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196040					SNP	A	A	A	A	A	A	A	A	A	A	A	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310377	NES09528109	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101944081 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	424 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	659 bp upstream
Rr99646	regulatory region 99646	319 bp proximal
Tssr38021	transcription start site region 38021	731 bp upstream
Tssr38022	transcription start site region 38022	831 bp upstream