rs28196042 SNP Detail

Summary

• ID
  rs28196042
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101943988 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTCACCA TCCATATGGT
  GCAGGTATGC CAGCCTGGTC CTGAACAGTT TGGGTCAGTG GGAAAATATG GAAAGTTATT
  TGCCACTTCC TTAGTGAGCC TTTATGTGCC CTTAGTATGC ATAGTTCAGG AAGACTTTAA
  CTCCCTGACC CTGTCTCCTT CCCACACAAA GAAAATCGCC TTCACTTGAA CAACTGTGAC
  Y
  TGTTTCATAG CTCATAATTC TGCCTGTTTT GGGTTATATG GCTGTTTCTT CCATTTGATG
  ACAAACTGCT GGGATGCAGA TTAGTGTCCT AAATACCCTA ACCATACCTC TGGGCTTCGT
  GTAAAATGCC CGGAAGGTTA TTGGAATGAA TTGAGAATAG GCTAAAGTAT CCATGAAAAG
  TCTTTCTAGT ATCTAATTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss38310379	NES09528107	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	C		C	T	T	C		C
ss321232348	CHEV_4_101759396	CHEVERUD	SCREENING_POP	f	SNP									T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28196042					SNP	T	T	T	T	C	T	T	C	T	C	T	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310379	NES09528107	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101943988 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	517 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	752 bp upstream
Rr99646	regulatory region 99646	412 bp proximal
Tssr38021	transcription start site region 38021	824 bp upstream
Tssr38022	transcription start site region 38022	924 bp upstream