rs28196044 SNP Detail

Summary

• ID
  rs28196044
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101943883 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGCAGA ACAGCCACTG
  GACAGTTGGC AGTGCTGCAG ACGGAGATTT AGGTGTTCCC TGGCAGGTGG TGTTGGAGAA
  AACAGTGCAC AGCAGGAGCT GACGGTGTCT CACCATCCAT ATGGTGCAGG TATGCCAGCC
  TGGTCCTGAA CAGTTTGGGT CAGTGGGAAA ATATGGAAAG TTATTTGCCA CTTCCTTAGT
  R
  AGCCTTTATG TGCCCTTAGT ATGCATAGTT CAGGAAGACT TTAACTCCCT GACCCTGTCT
  CCTTCCCACA CAAAGAAAAT CGCCTTCACT TGAACAACTG TGACTTGTTT CATAGCTCAT
  AATTCTGCCT GTTTTGGGTT ATATGGCTGT TTCTTCCATT TGATGACAAA CTGCTGGGAT
  GCAGATTAGT GTCCTAAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38310381	NES09528105	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196044					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310381	NES09528105	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101943883 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	622 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	857 bp upstream
Rr99646	regulatory region 99646	517 bp proximal
Tssr38021	transcription start site region 38021	929 bp upstream
Tssr38022	transcription start site region 38022	1029 bp upstream