rs28196047 SNP Detail

Summary

• ID
  rs28196047
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:101943663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCCACTG TGTCTTTGGA
  CAATGATGTC TTCATACTTA ATAAGTCTTG CTAATTAATT CTCACTGTAG TTCAGAGAAA
  AAGAGACTGT GTCAGAACCA TGACATTGCA TGGTTTGTTG GCTTCCCCCC AGAGGCTCAT
  TGCTTTGGTG TTATTAACTT TGGGCTCAAT TTCAAGGTAA CGGATGCAGT GGATGGCATA
  W
  AATACAAATC AAAAAGCCGG AAAAGCAGAA CAGCCACTGG ACAGTTGGCA GTGCTGCAGA
  CGGAGATTTA GGTGTTCCCT GGCAGGTGGT GTTGGAGAAA ACAGTGCACA GCAGGAGCTG
  ACGGTGTCTC ACCATCCATA TGGTGCAGGT ATGCCAGCCT GGTCCTGAAC AGTTTGGGTC
  AGTGGGAAAA TATGGAAAGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss38310384	NES09528102	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196047					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss38310384	NES09528102	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:101943663 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14506	CpG island 14506	842 bp proximal
Pde4b	phosphodiesterase 4B, cAMP specific	1077 bp upstream
Rr99646	regulatory region 99646	737 bp proximal
Tssr38021	transcription start site region 38021	1149 bp upstream
Tssr38022	transcription start site region 38022	1249 bp upstream