rs28196778 SNP Detail

Summary

• ID
  rs28196778
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79165201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGTCTCCC TCCCTCTCTT
  TCTGTCTCTC TCTCTCTCTG TCTCTCTCTC CTCTCTCTGT CTCTCTCTCC TCTCTCTCTC
  CCTCTCTCCC TTTCTCTCTC TCTCTCTCTC TCTCTCTCTT AGTTTGTTGT CAATGATGTT
  GCTGTTTTGT ATACAAGGTC TCCCGTGGTT CCAGATTGGA CTCTAACTAG GTGTGCAGCC
  R
  AAGATGAGCT CAGACTTCTG ATCCTTCTGC TTCTACTGCT GAGAGCTAGA ATCACAGATG
  TGCCCCACAC ACCCGCAGCT AGTTTCTCAA AGACCTTTTG ATACAGTGGC TCAAACAACT
  GAGAATGGTA AAACTCACTT AAAGATGTTA AGAAACTATG ATATGGCCTT TATTGTAAAG
  CCCCTTCTTT GTCTTCTTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss37151600	NES08467120	PERLEGEN	MM_PANEL2	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs28196778					SNP	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151600	NES08467120	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79165201 () rs orientation: forward

Symbol	Name	Function Class
D11Mit94	DNA segment, Chr 11, Massachusetts Institute of Technology 94	374 bp proximal
Gm44787	predicted gene 44787	427 bp upstream
Rr241861	regulatory region 241861	within coordinates
Rr251784	regulatory region 251784	132 bp distal
Rr251785	regulatory region 251785	1601 bp proximal
Tssr109475	transcription start site region 109475	484 bp upstream