rs28196834 SNP Detail

Summary

• ID
  rs28196834
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79135479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGATACTTAC TGCTTTACTG
  GCGCCAACTG AACACAGCAT AGAACAGTCG GGAGAGAATG CACAACTGTA CACCCAATTC
  TGATGTGCCC GCAATACTTT CACCATGTTT CCTGAACAAA AGAAGCATCC GTGTCAGGAC
  CCATTTCCAA TCAGTAACAC CTCGACGGAC AAGACAGTAA TCTACATTCA TCATAAACTT
  Y
  TGCAGCTGAA AGGGATGTAT ATGCATAGAA AGGCCTTCAA TATCAGCCAC CCGTTGCTTT
  CTTTCCATCC CTTTTACCAA GGCAGGAACT CTATATGTAG CCCTGGCTGT TCTAGAATTC
  ACTATGCAGA CCAAGATGGC CTAACTCACA AGGGGTAGTA TTTTGCTTGA TAAAATTACA
  CAGGGCTGGA GACACACCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151656	NES08467490	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196834					SNP	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151656	NES08467490	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79135479 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm103	DNA segment, Chr 11, Boehm 103	407 bp proximal
Gm30470	predicted gene, 30470	within coordinates
Tssr3595	transcription start site region 3595	186 bp upstream
Tssr109470	transcription start site region 109470	1308 bp upstream
Tssr109471	transcription start site region 109471	1223 bp upstream
Tssr109472	transcription start site region 109472	1185 bp upstream
Wsb1	WD repeat and SOCS box-containing 1	within coordinates