rs28196836 SNP Detail

Summary

• ID
  rs28196836
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79133796 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCCACATAC AGTTTAGATT TTAAACATCC AAAGACTGTG
  CAGAAGGCTC TAAATAGGTT TTGCTGGGTT TTGCTTTGAG GTCATGTCTC ACCAAGAAGT
  Y
  AAGCTGGCCT ATCTACTTGC CTTAGCCTCT CAAGTAGTTC TGGACAGTAT TCTAATGCTT
  ACTGTTAAGA GTAAATGTAA GCTGGGAGGT TTACAGCAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss37151658	NES08467488	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	C	T	C	T	T	T	C	T	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs28196836					SNP	T	T	C	C	T	C	T	T	T	C	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151658	NES08467488	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79133796 () rs orientation: forward

Symbol	Name	Function Class
Gm30470	predicted gene, 30470	within coordinates
Tssr3595	transcription start site region 3595	1483 bp downstream
Tssr109469	transcription start site region 109469	469 bp upstream
Tssr109470	transcription start site region 109470	344 bp downstream
Tssr109471	transcription start site region 109471	411 bp downstream
Tssr109472	transcription start site region 109472	486 bp downstream
Wsb1	WD repeat and SOCS box-containing 1	within coordinates