rs28196837 SNP Detail

Summary

• ID
  rs28196837
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79132942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTTCAAATC TATATATACT
  GAAAGCCAAT GTTGGGTTAC TAACTGAAAT AATTCATGTG GTACTCACCC AAACTCCATC
  AGAAGGTCTC CATTGTGTGG ATCCCAGACA TACACACGAG TGTCATAGGA TGCAGTAGCT
  AGCAATGCTC CATCAGGAGA AAAGTCACAA GCTACAACAT CATGGTGATG ACCTTCCAGC
  Y
  TCCTAATCAT GGTGTATTTA TCCATATTCC AAAGGAAAAC CTGAAATAAA AGAGGGAAAT
  GTTATAGTTT CACTCAGACA CACAGAGGAC AAAGGGGCAC ATCTTAAACT AAAATTGCTA
  CTTTAATTAC ATCAAATTAA TTACAAATTA TGAGTAATTT AAAGAATATG CTCAGTGTCG
  TAGATTAAAA ATCAGTCTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37151659	NES08467487	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28196837					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151659	NES08467487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79132942 () rs orientation: forward

Symbol	Name	Function Class
Gm30470	predicted gene, 30470	within coordinates
Tssr109469	transcription start site region 109469	375 bp downstream
Tssr109470	transcription start site region 109470	1198 bp downstream
Tssr109471	transcription start site region 109471	1265 bp downstream
Tssr109472	transcription start site region 109472	1340 bp downstream
Wsb1	WD repeat and SOCS box-containing 1	within coordinates