rs28196838 SNP Detail

Summary

• ID
  rs28196838
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79132600 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTATACTCC ATAATACTCA
  CTTATCATCA GCAAGGCTGG CAACATGCAG TCCATCATGA CTGAAAGACA CAGCTCTCAC
  CCATCGGTCA TTTGCTCCTC CAGCAAATAT TGGAGTGGGC GAGGGAAACA GGTGCCTGGG
  GTCAGAGACA CATTTGCAAA GTTTCAGAAT CAATTCAAGA AACAAAATAG CCCTGGTACC
  R
  AGTTCACTGG CCTCTGAATA AGGTTTAAAG TGGGGCTTTG ATGATACAAC TAAGACTGAA
  GAGAACTGTT ACAGCCGAAT TCAATGAAAC AGAGAGCTGT TCATTTTACA TTTTTGTTAG
  GGATTCTAAC TTTATACAAA TTCTTCAAAT CTATATATAC TGAAAGCCAA TGTTGGGTTA
  CTAACTGAAA TAATTCATGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss37151660	NES08467486	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	G	A		G
ss323759385	CHEV_11_79055276	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs28196838					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37151660	NES08467486	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79132600 () rs orientation: forward

Symbol	Name	Function Class
Gm30470	predicted gene, 30470	within coordinates
Tssr109468	transcription start site region 109468	1860 bp upstream
Tssr109469	transcription start site region 109469	717 bp downstream
Tssr109470	transcription start site region 109470	1540 bp downstream
Tssr109471	transcription start site region 109471	1607 bp downstream
Tssr109472	transcription start site region 109472	1682 bp downstream
Wsb1	WD repeat and SOCS box-containing 1	within coordinates