rs28197744 SNP Detail

Summary

• ID
  rs28197744
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:76494104 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTCCAGAG CCTGCAGTTA
  CCACCAGGAG CCAGTACCTA CCTGCATTAC CAACTCTAAG CAAGGCACAA AGAAACAGGC
  GTCAAATCAA GATAGAAAGA TAGGGGGTTT GACTGGAAAC TTTTTATTTA TTTATTTATT
  TTAAATTTTT TTTTAATCAT TTGCCAAAAA GACTAAAGGA ATATAAAGTT CTCTACAAAT
  Y
  CTTGACTGGA GCTATAAATG AGATCAACCT ATCTAAGCGC AGCACAGAGT TTTCTCTGAG
  CTTCAGCTGA GAGATTAAGA AGGCCAATCA TGCTGGGCAG TGGTGGCGCA TGCCTTTAAT
  CCCAGCACTT GGGAGGCAGA GGCAGATGGA TTTCTGAGTT CGAGGCCAGC CTGGTCTACA
  GAGTGAGTTC CAGGACAGCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss37154687	NES08466351	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs28197744					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss37154687	NES08466351	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:76494104 () rs orientation: forward

Symbol	Name	Function Class
Rpl36-ps2	ribosomal protein L36, pseudogene 2	1649 bp downstream
Tssr103096	transcription start site region 103096	1995 bp downstream
Tssr109299	transcription start site region 109299	1342 bp downstream